Installation Guide

R Installation

Prerequisites

• R >= 3.6.1
• Seurat >= 3.1.4
• RcppML >= 0.5.6

Method 1: Install from GitHub

# Install devtools if not already installed
if (!require("devtools")) {
    install.packages("devtools")
}

# Install UCASpatial from GitHub
devtools::install_github('https://github.com/BIGHanLab/UCASpatial/')

Method 2: Download and Source

# Download UCASpatial_v1.R from GitHub
# Then source it in your working directory
source('/DataPath/UCASpatial_v1.R')

Verify Installation

# Test if UCASpatial is properly loaded
tryCatch({
    UCASpatial_deconv
    print("UCASpatial successfully installed!")
}, error = function(e) {
    print("UCASpatial not properly installed")
})

# Download UCASpatial_ds_R1.py from GitHub
# Place it in your working directory

# Install required dependencies
pip install scanpy pandas numpy scikit-learn

# Import UCASpatial in your Python script
import UCASpatial_ds_R1

# Test if UCASpatial is properly loaded
try:
    ucas = UCASpatial_ds_R1.UCASpatial()
    print("UCASpatial successfully installed!")
except Exception as e:
    print(f"Installation error: {e}")